{
  "_id": "6a2532d44b233be198396685",
  "Type": "Package",
  "Package": "BCClong",
  "Title": "Bayesian Consensus Clustering for Multiple Longitudinal Features",
  "Version": "1.0.3",
  "Authors@R": "c(\nperson(\"Zhiwen\", \"Tan\", , \"21zt9@queensu.ca\", role = c(\"aut\", \"cre\")),\nperson(\"Zihang\", \"Lu\", , \"zihang.lu@queensu.ca\", role = \"ctb\"),\nperson(\"Chang\", \"Shen\", role = \"ctb\")\n)",
  "Maintainer": "Zhiwen Tan <21zt9@queensu.ca>",
  "Description": "It is very common nowadays for a study to collect multiple\nfeatures and appropriately integrating multiple longitudinal\nfeatures simultaneously for defining individual clusters\nbecomes increasingly crucial to understanding population\nheterogeneity and predicting future outcomes.  'BCClong'\nimplements a Bayesian consensus clustering (BCC) model for\nmultiple longitudinal features via a generalized linear mixed\nmodel. Compared to existing packages, several key features make\nthe 'BCClong' package appealing: (a) it allows simultaneous\nclustering of mixed-type (e.g., continuous, discrete and\ncategorical) longitudinal features, (b) it allows each\nlongitudinal feature to be collected from different sources\nwith measurements taken at distinct sets of time points (known\nas irregularly sampled longitudinal data), (c) it relaxes the\nassumption that all features have the same clustering structure\nby estimating the feature-specific (local) clusterings and\nconsensus (global) clustering.",
  "License": "MIT + file LICENSE",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.1",
  "Config/pak/sysreqs": "cmake libgmp3-dev make libmpfr-dev",
  "Repository": "https://zhiwent.r-universe.dev",
  "Date/Publication": "2024-06-26 02:33:23 UTC",
  "RemoteUrl": "https://github.com/zhiwent/bcclong",
  "RemoteRef": "HEAD",
  "RemoteSha": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-07 08:45:14 UTC",
    "User": "root"
  },
  "Author": "Zhiwen Tan [aut, cre],\nZihang Lu [ctb],\nChang Shen [ctb]",
  "MD5sum": "adf2b75f45367911cafae5475fecb213",
  "_user": "zhiwent",
  "_type": "src",
  "_file": "BCClong_1.0.3.tar.gz",
  "_fileid": "c3073bceabcdfac621c59bdba706a97685fa5e09f2facc38bc9daac343701139",
  "_filesize": 7963265,
  "_sha256": "c3073bceabcdfac621c59bdba706a97685fa5e09f2facc38bc9daac343701139",
  "_created": "2026-06-07T08:45:14.000Z",
  "_published": "2026-06-07T08:59:00.149Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79945394420,
      "time": 261,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462520318"
    },
    {
      "job": 79945394418,
      "time": 253,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462519045"
    },
    {
      "job": 79945394416,
      "time": 238,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462517345"
    },
    {
      "job": 79945394421,
      "time": 253,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462519075"
    },
    {
      "job": 79945394402,
      "time": 226,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462512898"
    },
    {
      "job": 79945394406,
      "time": 744,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462573185"
    },
    {
      "job": 79945394407,
      "time": 243,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462515447"
    },
    {
      "job": 79945394404,
      "time": 434,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462538255"
    },
    {
      "job": 79945096398,
      "time": 307,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462488284"
    },
    {
      "job": 79945394399,
      "time": 162,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462507901"
    },
    {
      "job": 79945394433,
      "time": 236,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462516774"
    },
    {
      "job": 79945394431,
      "time": 254,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462518991"
    },
    {
      "job": 79945394437,
      "time": 245,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462517980"
    }
  ],
  "_buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/zhiwent/bcclong",
  "_commit": {
    "id": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
    "author": "Leon Tan <21zt9@queensu.ca>",
    "committer": "Leon Tan <21zt9@queensu.ca>",
    "message": "fix typo\n",
    "time": 1719369203
  },
  "_maintainer": {
    "name": "Zhiwen Tan",
    "email": "21zt9@queensu.ca",
    "login": "zhiwent",
    "description": "",
    "uuid": 113395441
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "label.switching",
      "role": "Imports"
    },
    {
      "package": "LaplacesDemon",
      "role": "Imports"
    },
    {
      "package": "lme4",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "mclust",
      "role": "Imports"
    },
    {
      "package": "MCMCpack",
      "role": "Imports"
    },
    {
      "package": "mixAK",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "nnet",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.9",
      "role": "Imports"
    },
    {
      "package": "Rmpfr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "truncdist",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "joineRML",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    },
    {
      "package": "survminer",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "zhiwent",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "zhiwent",
      "count": 44,
      "uuid": 113395441
    },
    {
      "user": "deemolotus",
      "count": 2,
      "uuid": 35970596
    },
    {
      "user": "zl2021y",
      "count": 1,
      "uuid": 73567147
    }
  ],
  "_userbio": {
    "uuid": 113395441,
    "type": "user",
    "name": "ZhiwenT"
  },
  "_downloads": {
    "count": 163,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BCClong"
  },
  "_devurl": "https://github.com/zhiwent/bcclong",
  "_searchresults": 12,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BCClong.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/zhiwent/bcclong",
  "_realowner": "zhiwent",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-01-14"
    },
    {
      "version": "1.0.1",
      "date": "2023-08-08"
    },
    {
      "version": "1.0.2",
      "date": "2024-02-05"
    },
    {
      "version": "1.0.3",
      "date": "2024-06-24"
    }
  ],
  "_exports": [
    "BayesT",
    "BCC.multi",
    "model.selection.criteria",
    "traceplot",
    "trajplot"
  ],
  "_datasets": [
    {
      "name": "conRes",
      "title": "conRes dataset",
      "object": "conRes",
      "file": "conRes.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "T.obs",
        "T.rep"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "epil",
      "title": "epil dataset",
      "object": "epil",
      "file": "epil.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "time",
        "anxiety_scale",
        "depress_scale"
      ],
      "rows": 1852,
      "table": true,
      "tojson": true
    },
    {
      "name": "epil1",
      "title": "epil1 model",
      "object": "epil1",
      "file": "epil1.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "epil2",
      "title": "epil2 model",
      "object": "epil2",
      "file": "epil2.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "epil3",
      "title": "epil3 model",
      "object": "epil3",
      "file": "epil3.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "example",
      "title": "example model",
      "object": "example",
      "file": "example.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "example1",
      "title": "example1 model",
      "object": "example1",
      "file": "example1.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "PBCseqfit",
      "title": "PBCseqfit model",
      "object": "PBCseqfit",
      "file": "PBCseqfit.rda",
      "class": [
        "BCC"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "BayesT",
      "title": "Goodness of fit.",
      "topics": [
        "BayesT"
      ]
    },
    {
      "page": "BCC.multi",
      "title": "Compute a Bayesian Consensus Clustering model for mixed-type longitudinal data",
      "topics": [
        "BCC.multi"
      ]
    },
    {
      "page": "conRes",
      "title": "conRes dataset",
      "topics": [
        "conRes"
      ]
    },
    {
      "page": "epil",
      "title": "epil dataset",
      "topics": [
        "epil"
      ]
    },
    {
      "page": "epil1",
      "title": "epil1 model",
      "topics": [
        "epil1"
      ]
    },
    {
      "page": "epil2",
      "title": "epil2 model",
      "topics": [
        "epil2"
      ]
    },
    {
      "page": "epil3",
      "title": "epil3 model",
      "topics": [
        "epil3"
      ]
    },
    {
      "page": "example",
      "title": "example model",
      "topics": [
        "example"
      ]
    },
    {
      "page": "example1",
      "title": "example1 model",
      "topics": [
        "example1"
      ]
    },
    {
      "page": "model.selection.criteria",
      "title": "Model selection",
      "topics": [
        "model.selection.criteria"
      ]
    },
    {
      "page": "PBCseqfit",
      "title": "PBCseqfit model",
      "topics": [
        "PBCseqfit"
      ]
    },
    {
      "page": "plot.BCC",
      "title": "Generic plot method for BCC objects",
      "topics": [
        "plot.BCC"
      ]
    },
    {
      "page": "print.BCC",
      "title": "Generic print method for BCC objects",
      "topics": [
        "print.BCC"
      ]
    },
    {
      "page": "summary.BCC",
      "title": "Generic summary method for BCC objects",
      "topics": [
        "summary.BCC"
      ]
    },
    {
      "page": "traceplot",
      "title": "Trace plot function",
      "topics": [
        "traceplot"
      ]
    },
    {
      "page": "trajplot",
      "title": "Trajplot for fitted model",
      "topics": [
        "trajplot"
      ]
    }
  ],
  "_readme": "https://github.com/zhiwent/bcclong/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "boot",
    "cli",
    "cluster",
    "coda",
    "colorspace",
    "combinat",
    "cpp11",
    "evd",
    "farver",
    "fastGHQuad",
    "ggplot2",
    "glue",
    "gmp",
    "gridExtra",
    "gtable",
    "isoband",
    "label.switching",
    "labeling",
    "LaplacesDemon",
    "lattice",
    "lifecycle",
    "lme4",
    "lpSolve",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mclust",
    "mcmc",
    "MCMCpack",
    "minqa",
    "mixAK",
    "mnormt",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "quantreg",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "Rmpfr",
    "S7",
    "scales",
    "SparseM",
    "survival",
    "truncdist",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "ContinuousData.Rmd",
      "filename": "ContinuousData.html",
      "title": "ContinuousData",
      "author": "Zhiwen Tan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Components",
        "Pre-process (Setting up)",
        "Choose Best Number Of Clusters",
        "Fit BCC Model Using BCC.multi Function",
        "Printing Summary Statistics for key model parameters",
        "Visualize Clusters",
        "Posterior Check",
        "Package References"
      ],
      "created": "2022-09-29 03:40:38",
      "modified": "2024-06-23 23:56:31",
      "commits": 9
    },
    {
      "source": "MixedTypeData.Rmd",
      "filename": "MixedTypeData.html",
      "title": "MixedTypeData",
      "author": "Zhiwen Tan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Components",
        "Pre-process (Setting up)",
        "Fit BCC Model Using BCC.multi Function",
        "Printing Summary Statistics for key model parameters",
        "Visualize Clusters",
        "Package References"
      ],
      "created": "2022-09-29 03:40:38",
      "modified": "2024-06-23 23:56:31",
      "commits": 7
    }
  ],
  "_score": 4.982271233039569,
  "_indexed": true,
  "_nocasepkg": "bcclong",
  "_universes": [
    "zhiwent"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:47.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "3484aedea7233c202b2eeacc9ddecbb48702010ffc0426889de2457402975583",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:30.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "91e8a5fa7d255ae8f28791d8ea117b0ea05333507c96449eb95992caa07570dd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:28.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "296337f304a12d5f11df568a5aa67639439b7184903de11cae5774d6eea06e53",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:32.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "6f3ff6fb6fd76a46720facf6e845709e8faf3b1b711a1dbdf9606547c9f0c39e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:26.000Z",
      "arch": "aarch64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "0e3dbba861967f6a08230c5232ea1eb0d7dc303bf81ef033fdf128c7f7be1e9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-07T08:53:40.000Z",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "6e7f294bb41f035a0b0eee8e0b07244ab25a2b2940e1f129c6098e15235bad1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:37.000Z",
      "arch": "aarch64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "215b5deb44e5b416ba73672bfc2682335da4b44037a81d536e1ed2f8ac54b8ad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-07T08:50:41.000Z",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "6eb5e0e9437ebce403c4ac2b6ab39ef439c643ea4229d56555404dc4a6e24351",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-06-07T08:48:29.000Z",
      "arch": "emscripten",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "98f9533c415e1918fa3f2a0c7784b08e36aa87d3562906bb58f47111a2e2c538",
      "status": "success",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-07T08:47:21.000Z",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "4667b9af2182ba47dc4ac9c635b4eb96fc7755b0910cbf8402d34609f989f1c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-07T08:47:33.000Z",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "f6454878518ac32eee127bab3fe80228afc94a2ed855324f540b7df1e5322a6a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-07T08:47:33.000Z",
      "arch": "x86_64",
      "commit": "1b50efcdc7c54a120180b9f03d44192a936e98c7",
      "fileid": "84e0422cf9925be4518e042f3d59908778f852187f77eca5983b24b9d3c92c55",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhiwent/actions/runs/27087638008"
    }
  ]
}