Package: BCClong 1.0.3

BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features

It is very common nowadays for a study to collect multiple features and appropriately integrating multiple longitudinal features simultaneously for defining individual clusters becomes increasingly crucial to understanding population heterogeneity and predicting future outcomes. 'BCClong' implements a Bayesian consensus clustering (BCC) model for multiple longitudinal features via a generalized linear mixed model. Compared to existing packages, several key features make the 'BCClong' package appealing: (a) it allows simultaneous clustering of mixed-type (e.g., continuous, discrete and categorical) longitudinal features, (b) it allows each longitudinal feature to be collected from different sources with measurements taken at distinct sets of time points (known as irregularly sampled longitudinal data), (c) it relaxes the assumption that all features have the same clustering structure by estimating the feature-specific (local) clusterings and consensus (global) clustering.

Authors:Zhiwen Tan [aut, cre], Zihang Lu [ctb], Chang Shen [ctb]

BCClong_1.0.3.tar.gz
BCClong_1.0.3.zip(r-4.7)BCClong_1.0.3.zip(r-4.6)BCClong_1.0.3.zip(r-4.5)
BCClong_1.0.3.tgz(r-4.6-x86_64)BCClong_1.0.3.tgz(r-4.6-arm64)BCClong_1.0.3.tgz(r-4.5-x86_64)BCClong_1.0.3.tgz(r-4.5-arm64)
BCClong_1.0.3.tar.gz(r-4.7-arm64)BCClong_1.0.3.tar.gz(r-4.7-x86_64)BCClong_1.0.3.tar.gz(r-4.6-arm64)BCClong_1.0.3.tar.gz(r-4.6-x86_64)
BCClong_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
BCClong/json (API)

# Install 'BCClong' in R:
install.packages('BCClong', repos = c('https://zhiwent.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhiwent/bcclong/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

openblascppopenmp

4.98 score 4 stars 12 scripts 305 downloads 5 exports 56 dependencies

Last updated from:1b50efcdc7. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK243
linux-devel-x86_64OK277
source / vignettesOK379
linux-release-arm64OK286
linux-release-x86_64OK259
macos-release-arm64OK346
macos-release-x86_64OK432
macos-oldrel-arm64OK326
macos-oldrel-x86_64OK388
windows-develOK251
windows-releaseOK225
windows-oldrelOK226
wasm-releaseOK191

Exports:BayesTBCC.multimodel.selection.criteriatraceplottrajplot

Dependencies:abindbootcliclustercodacolorspacecombinatcpp11evdfarverfastGHQuadggplot2gluegmpgridExtragtableisobandlabel.switchinglabelingLaplacesDemonlatticelifecyclelme4lpSolveMASSMatrixMatrixModelsmclustmcmcMCMCpackminqamixAKmnormtmvtnormnlmenloptrnnetquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangRmpfrS7scalesSparseMsurvivaltruncdistvctrsviridisLitewithr

ContinuousData
Introduction | Components | Pre-process (Setting up) | Choose Best Number Of Clusters | Fit BCC Model Using BCC.multi Function | Printing Summary Statistics for key model parameters | Visualize Clusters | Posterior Check | Package References

Last update: 2024-06-23
Started: 2022-09-29

MixedTypeData
Introduction | Components | Pre-process (Setting up) | Fit BCC Model Using BCC.multi Function | Printing Summary Statistics for key model parameters | Visualize Clusters | Package References

Last update: 2024-06-23
Started: 2022-09-29